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AT5G18560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes PUCHI, a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis. Expressed in early floral meristem (stage 1 to 2). Required for early floral meristem growth and for bract suppression. Triple mutant with bop1 and bop2 displays a strong defect in the determination of floral meristem identity with reduced LFY expression and the lack of AP1 expression.
Computational
Description (TAIR10)
PUCHI; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G13910.1); Has 5489 Blast hits to 5364 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 5473; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J035eggNOG:ENOG410YKACEMBL:AC069328EMBL:AY560873
EMBL:CP002688EnsemblPlants:AT5G18560EnsemblPlants:AT5G18560.1entrez:831974
Gene3D:3.30.730.10GeneID:831974Genevisible:Q6J9Q2GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873GO:GO:0009908
GO:GO:0010102GO:GO:0010432GO:GO:0010451GO:GO:0010582
GO:GO:0044212Gramene:AT5G18560.1hmmpanther:PTHR31677hmmpanther:PTHR31677:SF22
HOGENOM:HOG000176627InParanoid:Q6J9Q2InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT5G18560OMA:HCLKPPPPaxDb:Q6J9Q2Pfam:PF00847
Pfam:Q6J9Q2Pfscan:PS51032PRINTS:PR00367PRO:PR:Q6J9Q2
PROSITE:PS51032ProteinModelPortal:Q6J9Q2Proteomes:UP000006548RefSeq:NP_197357.2
SMART:SM00380SMR:Q6J9Q2STRING:3702.AT5G18560.1SUPFAM:SSF54171
TAIR:AT5G18560tair10-symbols:PUCHIUniGene:At.49752UniProt:Q6J9Q2
Coordinates (TAIR10) chr5:-:6164859..6165905
Molecular Weight (calculated) 38457.30 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.67
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTSKTLDHN KPFETSQTQM GFALIHQNTS ANTTTTTTTG ERRGRRSKQA EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAHEA ALAYDRAALS
101: MRGTQARTNF VYTPTDVHTI LTNPNLHSLI VSPYNNNQSF LPNSSPQFVI DHHPHYQNYH QPQQPKHTLP QTVLPAASFK TPVRHQSVDI QAFGNSPQNS
201: SSNGSLSSSL DEENNFFFSL TSEEHNKSNN NSGYLDCIVP NHCLKPPPEA TTTQNQAGAS FTTPVASKAS EPYGGFSNSY FEDGEMMMMN HHEFGSCDLS
301: AMITNYGAAA ASMSMEDYGM MEPQDLSSSS IAAFGDVVAD TTGFYSVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)