AT5G12970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.619 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT3G57880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4102992..4105301 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88514.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||
| Length | 769 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQKPGQNIDF ALKETSPKIG AGSVTGDKLC STYDLVEQMH YLYVRVVKAK ELPGKDVTGS CDPYVEVKLG NYRGMTKHFE KRSNPEWKQV FAFSKERIQA 101: SILEVVVKDK DVVLDDLIGR IMFDLNEIPK RVPPDSPLAP QWYRLEDRHG RKVKGELMLA VWMGTQADEA FSDAWHSDAA TVGPEGVTHI RSKVYLSPKL 201: WYVRVNVIEA QDLIPHDKTK FPEVYVKAML GNQTLRTRIS QTKTLNPMWN EDLMFVVAEP FEEALILAVE DRVAPNKDET LGRCAIPLQN VQRRLDHRPL 301: NSRWFNLEKH IMVEGEQKEI KFASRIHLRI FLEGGYHVLD ESTHYSSDLR PTAKQLWKPS IGLLEVGIIS AHGLMPMKSK DGKGTTDAYC VAKYGQKWIR 401: TRTIVDSFTP KWNEQYTWEV FDTCTVITFG AFDNGHIPGG SGKDLRIGKV RIRLSTLEAD RIYTHSYPLL VFHPSGIKKT GEIQLAVRFT CLSLINMLHM 501: YSQPLLPKMH YIHPLSVLQL DSLRHQAMNI VSARLNRAEP PLRKEIVEYM LDVDSHMWSM RRSKANFFRI MNVLSGLIAV GKWFDQICNW RNPITTILIH 601: VLFIILVLYP ELILPTVFLY LFLIGIWNFR WRPRHPPHMD TRLSHADAVH PDELDEEFDT FPTSRSSEIV RMRYDRLRSI GGRVQTVIGD LATQGERFLS 701: LLSWRDPRAT TLFVLFCLIA AIVLYVTPFQ VVALLAGIYV LRHPRFRHKL PSVPLNLFRR LPARSDSLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)