AT5G10550.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : global transcription factor group E2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
This gene is predicted to encode a bromodomain-containing protein. A plant line expressing RNAi constructs targeted against GTE7 shows some resistance to agrobacterium-mediated root transformation. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
global transcription factor group E2 (GTE2); CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: global transcription factor group E7 (TAIR:AT5G65630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:3332855..3335232 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 75365.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 678 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDRATSLNRS EPSDLESTVR RSTKRFNGQI SMSFKKRRCL TLFFLVLLSK QQSLSFLPIA GIVFPVALIS HFNFCMAPAV LANLNEPLFL GQCGAVFMRK 101: YTNQPLSGDI NNPLFNPNPN PNSISAYGNN SSKHFDDSSA YGDYVSFDLD GYTSNQLREL KKRLNSELEE VRFLRERIES GTFVSGSVYT TQARSFAGET 201: NDVGVKKTKT KKKKIGHGQK RSNPFATDEP SLKRHVALDL MSEKVLKSMM TTCGQILVKL MKHKWSWVFL NPVDVVGLGL HDYHRIVDKP MDLGTVKMNL 301: EKGLYRSPID FASDVRLTFT NAMSYNPKGQ DVYLMAEKLL SQFDVWFNPT LKRFEAQEVK VMGSSSRPGP EDNQRVWNQN NVAENARKGP EQISIAKKLD 401: SVKPLLPTLP PPPVIEITRD PSPPPSPVQP PPPPSPPPQP VNQVEASLEV RETNKGRKGK LPKPKAKDPN KREMTMDEKG KLGVNLQELP PEKLGQLIQI 501: LRKRTRDLPQ DGDEIELDIE ALDNETLWEL DRFVTNYRKM ASKIKRQGFI QNVSTPPRNM PPVTEMGSAE KRGRKGGEAG EEDVDIGEDI PVEDYPSVEI 601: ERDGTAAAAS GGSSSSGSFS SSGSSSSSDS ESGSSSGSDS DADSVQSPFV EAKEAPWNLC VNGRERKEGK LERKDFEC |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)