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AT5G10550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : global transcription factor group E2
Curator
Summary (TAIR10)
This gene is predicted to encode a bromodomain-containing protein. A plant line expressing RNAi constructs targeted against GTE7 shows some resistance to agrobacterium-mediated root transformation.
Computational
Description (TAIR10)
global transcription factor group E2 (GTE2); CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: global transcription factor group E7 (TAIR:AT5G65630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16198eggNOG:COG5076eggNOG:KOG1474EMBL:AK117955
EMBL:AL353995EMBL:CP002688EnsemblPlants:AT5G10550EnsemblPlants:AT5G10550.1
entrez:830920Gene3D:1.20.920.10GeneID:830920Genevisible:Q9LXA7
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT5G10550.1
hmmpanther:PTHR22880hmmpanther:PTHR22880:SF148HOGENOM:HOG000241042InParanoid:Q9LXA7
InterPro:IPR001487InterPro:IPR027353iPTMnet:Q9LXA7KEGG:ath:AT5G10550
ncoils:CoilPaxDb:Q9LXA7Pfam:PF00439Pfam:PF17035
Pfam:Q9LXA7Pfscan:PS50014Pfscan:PS51525PhylomeDB:Q9LXA7
PIR:T49984PRINTS:PR00503PRO:PR:Q9LXA7PROSITE:PS50014
PROSITE:PS51525ProteinModelPortal:Q9LXA7Proteomes:UP000006548RefSeq:NP_196617.1
SMART:SM00297SMR:Q9LXA7STRING:3702.AT5G10550.1SUPFAM:SSF47370
TAIR:AT5G10550tair10-symbols:GTE2TMHMM:TMhelixUniGene:At.73023
UniProt:Q9LXA7
Coordinates (TAIR10) chr5:-:3332855..3335232
Molecular Weight (calculated) 75365.40 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.65
Length 678 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRATSLNRS EPSDLESTVR RSTKRFNGQI SMSFKKRRCL TLFFLVLLSK QQSLSFLPIA GIVFPVALIS HFNFCMAPAV LANLNEPLFL GQCGAVFMRK
101: YTNQPLSGDI NNPLFNPNPN PNSISAYGNN SSKHFDDSSA YGDYVSFDLD GYTSNQLREL KKRLNSELEE VRFLRERIES GTFVSGSVYT TQARSFAGET
201: NDVGVKKTKT KKKKIGHGQK RSNPFATDEP SLKRHVALDL MSEKVLKSMM TTCGQILVKL MKHKWSWVFL NPVDVVGLGL HDYHRIVDKP MDLGTVKMNL
301: EKGLYRSPID FASDVRLTFT NAMSYNPKGQ DVYLMAEKLL SQFDVWFNPT LKRFEAQEVK VMGSSSRPGP EDNQRVWNQN NVAENARKGP EQISIAKKLD
401: SVKPLLPTLP PPPVIEITRD PSPPPSPVQP PPPPSPPPQP VNQVEASLEV RETNKGRKGK LPKPKAKDPN KREMTMDEKG KLGVNLQELP PEKLGQLIQI
501: LRKRTRDLPQ DGDEIELDIE ALDNETLWEL DRFVTNYRKM ASKIKRQGFI QNVSTPPRNM PPVTEMGSAE KRGRKGGEAG EEDVDIGEDI PVEDYPSVEI
601: ERDGTAAAAS GGSSSSGSFS SSGSSSSSDS ESGSSSGSDS DADSVQSPFV EAKEAPWNLC VNGRERKEGK LERKDFEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)