AT5G10200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.848 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM-repeat/Tetratricopeptide repeat (TPR)-like protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (TAIR:AT5G43120.1); Has 2055 Blast hits to 1944 proteins in 240 species: Archae - 0; Bacteria - 3; Metazoa - 1049; Fungi - 393; Plants - 364; Viruses - 4; Other Eukaryotes - 242 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3202378..3204367 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71257.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||
| Length | 631 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKASSQECP YPGCFFCVMK EGNPSKRRSC ILKFFRDLPS QDDDGQVLPI SGLWNTAMAH PNDPEFIELG IFECMSALIW KGLKNRRWLS HDQNIYIPYY 101: AAHIIGSYTM NMEEFAERAV EAGVIPPLVE LLRGRLTWVE QRVAVRALGH LATYPSTFPA VADHGEILEL AIQLAMSSLE IVYSHFYQYP DRRLSYHCDL 201: LTRGMGGVEM ESRKAEEWAS QLQCWSLQLI NCFAFKPEFL PTLCKPEFLV NLPVMWGGLV NENSPAGIGL LRTICQHKLG RGPVSACAGM IEALCNIARS 301: SDDWQYMAIE CLLWLLQDPN TSHKVIDKAV PTLVDLAEIT NLGDHKKLGD SIVSVLQECS SMGNRSRELI EETVNSRQRL KWEKSMPKED LHIKQAAALV 401: VKLEGNSLFS SGDIAGAAEK YSEALSLCPM RSKKERVVLY SNRAQCHLLL QQPLVAISDA TRALCLHNPV NRHAKSLWRR AQAYDMLGLA KESLLDAILF 501: INECSQSNDP DLSMRQNKVP DYAERLVKKQ MRAAWLFKEA ALKHGGVHRK GEEREVYGNE TDDSEWETAS ESDIGDDGRD HMGLDDEEEE EEDEGHGEKW 601: KNRDKSSEKN EKTSAKGMRH GYSIKLAEDE I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)