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AT5G07560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein 20
Curator
Summary (TAIR10)
Lipid-binding oleosins, glycine-rich protein.
Computational
Description (TAIR10)
glycine-rich protein 20 (GRP20); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid storage, sexual reproduction; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: Oleosin family protein (TAIR:AT5G07571.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTGPeggNOG:ENOG41107V2EMBL:AF362477EMBL:AL163912
EMBL:BT004110EMBL:BT005466EMBL:CP002688EnsemblPlants:AT5G07560
EnsemblPlants:AT5G07560.1entrez:830649GeneID:830649GO:GO:0005576
GO:GO:0008289GO:GO:0012511GO:GO:0016021GO:GO:0019915
GO:GO:0019953Gramene:AT5G07560.1hmmpanther:PTHR33203hmmpanther:PTHR33203:SF7
InterPro:IPR000136KEGG:ath:AT5G07560OMA:GLTILMWPfam:PF01277
PhylomeDB:Q9LY07PIR:T49895Proteomes:UP000006548RefSeq:NP_196373.1
STRING:3702.AT5G07560.1TAIR:AT5G07560tair10-symbols:ATGRP20tair10-symbols:GRP20
TMHMM:TMhelixUniGene:At.5236UniProt:Q9LY07
Coordinates (TAIR10) chr5:-:2390468..2391044
Molecular Weight (calculated) 15459.40 Da
IEP (calculated) 11.20
GRAVY (calculated) 0.56
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPFPLSLIF GKKKRRRDDE IRRQKPTLKG VMTAFFATEA AICLLLLAGI SLTGTAVALF ASMPLFLVFS PVLVPAGIAT TILASGLMAG GTSGVSGLTI
101: LMWLYKKYTG RDFPIKIPGA AAAGGAAPAA PAAPAPAAPA AKPAAKPAAK PGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)