AT5G05570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: methyltransferase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: vesicle-mediated transport, methylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052), WD40 repeat, subgroup (InterPro:IPR019781), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1656766..1663728 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122667.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1124 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFVRKFLQKS SGGQNPPPPI APPPRGCLMA EDLDPHIITH SGIPSTASLL AFDPIQCLLA VGTLDGRIKV IGGDNIEAIL ASPKQLPFKN LEFMQNQGFL 0101: VSISNENEIQ VWDLDLRQPA SSLKWESNIT AFAILHGTGY MYVGDEYGMV SVLNYSADEG KLLQLPYYVP TDALSEAAGL SSPIDYPVVG LLSQPCSKGT 0201: RLLIAFSNGL LFLWDASEDH VVLVRGNKDL PVEGKTVADS LEASHDELSN LELDGKEISS LCWASTDGSV LAVGYVDGDI LFWDFSDGQK GKPSNHVVKL 0301: QLSSAEKRLP VIVMHWCLDV SRKSSGGKLF IYGGDIIGSD EVLTMLGLDW SSGMGGLKCV GRADLTLSGS FADMVLSPIA SSRQSGVFLF LLTNPGQLQA 0401: YDDTSLASLM SQKENKISVS PLPYPMVVPT MDPHMTVATF SALNVNDKTS LALSEIVLAA KARTPRTPSG ESAQWPLTGG VPSHVDDYKL ERLYMAGYQD 0501: GSMRIWDATY PCLSLIYILE PKASVIDITG VDASVTAFCF CSKTSCLAVG NECGMVRLYK LVGHTSGGTL EVVTNTEKKG LAIVTTLTLW ICYALSHAVG 0601: SLLVAHHLHQ EDGPQWLAAF SFLSSPVCTL QFVQSTRRLA VGFKCGKVAV LDIGVPSVLF VTNSLSDSGS PIKSLYVKSS SAPTGSKSDP TDHNSINSED 0701: DLLLCAMTKD GQTILLDGNT GKILASCLRP LKNPTAICMH IIENCYENYE TPSEKPAENP SGKDKHENKS HIIKASESHS PDGEQNAVTE TKLIDQIFAN 0801: SLFLMCSEDA LRLYTVKSLS QGSLESIMEV NLPRPCCWMG ILKKDGRECA VLLFYRTGHI EIRSFPNLEV VGESSLLSLL RWNFKPNMEK TVCSDDFGHV 0901: VLVNGCEVAI LSFLAHANGF RLPESLPLLH DKVLAAAADA TFSHISVHKK NHDGAPKFLS NIIKGFRSST EQKMDQVQDF SHLGNIFSNP PYLKPSDTGG 1001: DDEKIVELNI DDIEIDEPVI ILPLTEKDKK EKKDKRTDKE KLFDGASSDA QPKTRTVDEI KSKYRKAGET SAIASQAKDK LHERGEKLER ISQRTAELQD 1101: NAENFASMAH ELAKQMEKRK WWNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)