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AT5G02120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : one helix protein
Curator
Summary (TAIR10)
Encodes a one helix protein homologous to cyanobacterial high-light inducible proteins. The protein is localized to the thylakoid membrane and its transcript is transiently induced by exposure to high light conditions.
Computational
Description (TAIR10)
one helix protein (OHP); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to high light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1EEeggNOG:ENOG410YTYCEMBL:AF054617EMBL:AL162508
EMBL:AY062846EMBL:AY081584EMBL:AY085659EMBL:CP002688
EnsemblPlants:AT5G02120EnsemblPlants:AT5G02120.1entrez:831799GeneID:831799
Genevisible:O81208GO:GO:0007623GO:GO:0009507GO:GO:0009523
GO:GO:0009535GO:GO:0009644GO:GO:0015979GO:GO:0016021
GO:GO:0016168GO:GO:0018298Gramene:AT5G02120.1hmmpanther:PTHR14154
hmmpanther:PTHR14154:SF11HOGENOM:HOG000241324InParanoid:O81208InterPro:IPR023329
KEGG:ath:AT5G02120OMA:STHCHGRPaxDb:O81208Pfam:O81208
PhylomeDB:O81208PIR:T48233PRIDE:O81208PRO:PR:O81208
ProteinModelPortal:O81208Proteomes:UP000006548RefSeq:NP_195832.1SMR:O81208
STRING:3702.AT5G02120.1SUPFAM:0043399SUPFAM:SSF103511TAIR:AT5G02120
tair10-symbols:OHPUniGene:At.23559UniProt:O81208
Coordinates (TAIR10) chr5:+:419144..419633
Molecular Weight (calculated) 12010.90 Da
IEP (calculated) 10.14
GRAVY (calculated) 0.19
Length 110 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSPLSSSL FHPLSTLSTH CHGRRQNLCF NRKQQPFVVR AAKLPEGVIV PKAQPKSQPA FLGFTQTAEI WNSRACMIGL IGTFIVELIL NKGILELIGV
101: EIGKGLDLPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)