suba logo
AT4G39260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:24012629 (2013): nucleus
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23673981 (2013): plastid
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19329564 (2009): peroxisome
  • PMID:17951448 (2007): peroxisome
  • PMID:17644812 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cold, circadian rhythm, and RNA binding 1
Curator
Summary (TAIR10)
Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).
Computational
Description (TAIR10)
cold, circadian rhythm, and RNA binding 1 (CCR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to zinc ion, response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and rna binding 2 (TAIR:AT2G21660.2); Has 126 Blast hits to 126 proteins in 35 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 21; Plants - 62; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
BioGrid:15362eggNOG:ENOG410IQXMeggNOG:ENOG41121QZEMBL:AL050351
EMBL:AL161594EMBL:AY034997EMBL:AY063005EMBL:CP002687
EMBL:L00649EMBL:L04171EMBL:Z14988EnsemblPlants:AT4G39260
EnsemblPlants:AT4G39260.1entrez:830082ExpressionAtlas:Q03251Gene3D:3.30.70.330
GeneID:830082Genevisible:Q03251GO:GO:0000166GO:GO:0000380
GO:GO:0003723GO:GO:0005618GO:GO:0005730GO:GO:0005777
GO:GO:0005794GO:GO:0005886GO:GO:0009409GO:GO:0009506
GO:GO:0009507GO:GO:0009651GO:GO:0009735GO:GO:0009737
GO:GO:0010043GO:GO:0045087GO:GO:0048046hmmpanther:PTHR24012
HOGENOM:HOG000276232InParanoid:Q03251InterPro:IPR000504InterPro:IPR012677
iPTMnet:Q03251KEGG:ath:AT4G39260MINT:MINT-1163792OMA:LQGTELM
PaxDb:Q03251Pfam:PF00076Pfam:Q03251Pfscan:PS50102
PIR:S30148PRIDE:B9DFJ8PRIDE:Q03251PRO:PR:Q03251
PROSITE:PS50102ProteinModelPortal:Q03251Proteomes:UP000006548RefSeq:NP_195637.1
SMART:SM00360SMR:Q03251STRING:3702.AT4G39260.1SUPFAM:SSF54928
TAIR:AT4G39260tair10-symbols:ATGRP8tair10-symbols:CCR1tair10-symbols:GR-RBP8
tair10-symbols:GRP8UniGene:At.23968UniProt:B9DFJ8UniProt:Q03251
Coordinates (TAIR10) chr4:-:18274166..18274958
Molecular Weight (calculated) 16579.70 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.82
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GGGRGGSGGG
101: YRSGGGGGYS GGGGGGYSGG GGGGYERRSG GYGSGGGGGG RGYGGGGRRE GGGYGGGDGG SYGGGGGGW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)