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AT4G33580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta carbonic anhydrase 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1429-MONOMEREC:4.2.1.1eggNOG:COG0288eggNOG:KOG1578
EMBL:AK221870EMBL:AK317565EMBL:AL031394EMBL:AL161583
EMBL:AY034930EMBL:AY088420EMBL:AY122986EMBL:CP002687
EnsemblPlants:AT4G33580EnsemblPlants:AT4G33580.1EnsemblPlants:AT4G33580.2entrez:829498
ExpressionAtlas:Q94CE3Gene3D:3.40.1050.10GeneID:829498Genevisible:Q94CE3
GO:GO:0004089GO:GO:0008270GO:GO:0009507GO:GO:0015976
gramene_pathway:4.2.1.1gramene_pathway:CYANCAT-PWYhmmpanther:PTHR11002hmmpanther:PTHR11002:SF12
HOGENOM:HOG000125183InterPro:IPR001765InterPro:IPR015892iPTMnet:Q94CE3
KEGG:00910+4.2.1.1KEGG:ath:AT4G33580KO:K01673OMA:RSWVING
PANTHER:PTHR11002PaxDb:Q94CE3Pfam:PF00484Pfam:Q94CE3
PhylomeDB:Q94CE3PIR:T04975PRIDE:Q94CE3PRO:PR:Q94CE3
PROSITE:PS00704ProteinModelPortal:Q94CE3Proteomes:UP000006548RefSeq:NP_001031784.1
RefSeq:NP_567928.1scanprosite:PS00704SMART:SM00947SMR:Q94CE3
STRING:3702.AT4G33580.2SUPFAM:SSF53056TAIR:AT4G33580tair10-symbols:ATBCA5
tair10-symbols:BCA5UniGene:At.2447UniGene:At.65449UniProt:Q94CE3
Coordinates (TAIR10) chr4:+:16139406..16141363
Molecular Weight (calculated) 33402.60 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.37
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATPTHFSV SHDPFSSTSL LNLQTQAIFG PNHSLKTTQL RIPASFRRKA TNLQVMASGK TPGLTQEANG VAIDRQNNTD VFDDMKQRFL AFKKLKYMDD
101: FEHYKNLADA QAPKFLVIAC ADSRVCPSAV LGFQPGDAFT VRNIANLVPP YESGPTETKA ALEFSVNTLN VENILVIGHS RCGGIQALMK MEDEGDSRSF
201: IHNWVVVGKK AKESTKAVAS NLHFDHQCQH CEKASINHSL ERLLGYPWIE EKVRQGSLSL HGGYYNFVDC TFEKWTVDYA ASRGKKKEGS GIAVKDRSVW
301: S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)