AT4G32810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : carotenoid cleavage dioxygenase 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
carotenoid cleavage dioxygenase 8 (CCD8); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 6 (TAIR:AT3G24220.1); Has 2642 Blast hits to 2570 proteins in 479 species: Archae - 17; Bacteria - 769; Metazoa - 368; Fungi - 139; Plants - 827; Viruses - 0; Other Eukaryotes - 522 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15828348..15831299 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63960.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 570 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLITTKAM MSHHHVLSST RITTLYSDNS IGDQQIKTKP QVPHRLFARR IFGVTRAVIN SAAPSPLPEK EKVEGERRCH VAWTSVQQEN WEGELTVQGK 101: IPTWLNGTYL RNGPGLWNIG DHDFRHLFDG YSTLVKLQFD GGRIFAAHRL LESDAYKAAK KHNRLCYREF SETPKSVIIN KNPFSGIGEI VRLFSGESLT 201: DNANTGVIKL GDGRVMCLTE TQKGSILVDH ETLETIGKFE YDDVLSDHMI QSAHPIVTET EMWTLIPDLV KPGYRVVRME AGSNKREVVG RVRCRSGSWG 301: PGWVHSFAVT ENYVVIPEMP LRYSVKNLLR AEPTPLYKFE WCPQDGAFIH VMSKLTGEVV ASVEVPAYVT FHFINAYEED KNGDGKATVI IADCCEHNAD 401: TRILDMLRLD TLRSSHGHDV LPDARIGRFR IPLDGSKYGK LETAVEAEKH GRAMDMCSIN PLYLGQKYRY VYACGAQRPC NFPNALSKVD IVEKKVKNWH 501: EHGMIPSEPF FVPRPGATHE DDGVVISIVS EENGGSFAIL LDGSSFEEIA RAKFPYGLPY GLHGCWIPKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)