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AT4G31370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.555
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan protein 5 precursor
Curator
Summary (TAIR10)
fasciclin-like arabinogalactan-protein, putative (FLA5)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan protein 5 precursor (FLA5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 3 precursor (TAIR:AT2G24450.1); Has 2362 Blast hits to 1863 proteins in 310 species: Archae - 0; Bacteria - 554; Metazoa - 321; Fungi - 257; Plants - 835; Viruses - 150; Other Eukaryotes - 245 (source: NCBI BLink).
Protein Annotations
BioGrid:14550eggNOG:ENOG410IKAGeggNOG:ENOG4112B5JEMBL:AL021633
EMBL:AL080283EMBL:AL161578EMBL:BT026043EMBL:CP002687
EnsemblPlants:AT4G31370EnsemblPlants:AT4G31370.1entrez:829264Gene3D:2.30.180.10
GeneID:829264GO:GO:0005886GO:GO:0031225Gramene:AT4G31370.1
hmmpanther:PTHR32382hmmpanther:PTHR32382:SF15HOGENOM:HOG000240695InParanoid:O49586
InterPro:IPR000782InterPro:IPR033254KEGG:ath:AT4G31370OMA:NILMTHV
PANTHER:PTHR32382PaxDb:O49586Pfam:O49586Pfam:PF02469
Pfscan:PS50213PhylomeDB:O49586PIR:T04504PRIDE:O49586
PRO:PR:O49586PROSITE:PS50213ProteinModelPortal:O49586Proteomes:UP000006548
RefSeq:NP_194865.1STRING:3702.AT4G31370.1SUPFAM:SSF82153TAIR:AT4G31370
tair10-symbols:FLA5TMHMM:TMhelixUniGene:At.49720UniProt:O49586
Coordinates (TAIR10) chr4:-:15223838..15224674
Molecular Weight (calculated) 29918.10 Da
IEP (calculated) 6.28
GRAVY (calculated) 0.08
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLKASLSLL SLTILLVFSK VVTANNITLA FQKYSKFSTM RDLFIKTKLI AAIDKYQTIT VLAVSNDAIS SITNRSEVEL RNILMTHVIL DYYDELKLQG
101: MREKSIMLTT LYQTTGLGEQ MNGFLNVSKS KGRVYFGSEV KNSPLNAEYV STVYHNPYNL SIIQITMPIV APGLSLAIFP PPPPYVHVAP YPTPMDASVV
201: PAPGPAADDN SPDSAVPKTP PAPATDTPEA DSPAPAPSAD NEKIEAADKA KPSSSASKAG WSFDVILLLA FLASFAGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)