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AT4G30940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.973
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BTB/POZ domain with WD40/YVTN repeat-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB/POZ domain with WD40/YVTN repeat-like protein; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain with WD40/YVTN repeat-like protein (TAIR:AT2G24240.1); Has 1166 Blast hits to 1152 proteins in 112 species: Archae - 0; Bacteria - 4; Metazoa - 915; Fungi - 4; Plants - 126; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
BioGrid:14506eggNOG:ENOG410XSWIeggNOG:KOG2714EMBL:AF428394
EMBL:AL022198EMBL:AL161578EMBL:AY133576EMBL:CP002687
EnsemblPlants:AT4G30940EnsemblPlants:AT4G30940.1entrez:829219Gene3D:2.130.10.10
GeneID:829219Genevisible:O65555GO:GO:0016567GO:GO:0051260
Gramene:AT4G30940.1hmmpanther:PTHR14499hmmpanther:PTHR14499:SF70HOGENOM:HOG000239256
InParanoid:O65555IntAct:O65555InterPro:IPR000210InterPro:IPR003131
InterPro:IPR011333InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT4G30940
OMA:PNIPERLPaxDb:O65555Pfam:O65555Pfam:PF02214
Pfscan:PS50097PhylomeDB:O65555PIR:C85362PRIDE:O65555
PRO:PR:O65555PROSITE:PS50097ProteinModelPortal:O65555Proteomes:UP000006548
RefSeq:NP_194823.1SMART:SM00225SMR:O65555STRING:3702.AT4G30940.1
SUPFAM:SSF50978SUPFAM:SSF54695TAIR:AT4G30940UniGene:At.26255
UniPathway:UPA00143UniProt:O65555
Coordinates (TAIR10) chr4:+:15055149..15056474
Molecular Weight (calculated) 49054.90 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.24
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSNDRIKF NVGGRIFETT ATTLANAGRD SFFGALFDEN WNLSQPGDLF IDRNPDCFAV LLDLLRTGDL NIPPNIPERL LHKEAMFYGL IDHLRTAKWG
101: PFDGNRLHLS RSVTGIAPGD GTAIRAGPDG GCCIAHGSVV HVFDWMLEEH PTINLDYQRV NDVGWIDSGN IVLSACERLG RGDGGMGLFS SSSGELRYKF
201: QVSHDNQVKS YSAGALSFSP DSKIFTSCKG RSNEYGIGVW DQSTGKQVDF FYESPGWSLG DADKLQWLSG KNCLLVATLF PRKDNCYISL LDFREKNMVW
301: SWSDIGFLTM AEEKRVRDAI AMEESNSICV VNEFEDLGFI DLRMDGGGSS VRWSSRSRLM KSKMPDEPCY PKLALHEGQL FSSMNDSISV FCGSDWVLTS
401: RLKRSYGGSI CDFSIGGDRL FALHSEENVF DVWETLPPPI I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)