AT4G28940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phosphorylase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phosphorylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: Phosphorylase superfamily protein (TAIR:AT4G24340.1); Has 4063 Blast hits to 3116 proteins in 1287 species: Archae - 0; Bacteria - 3887; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14274414..14276920 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38486.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||
| Length | 348 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGHFLIGFLV VVLSVGNVIE EANGEIPRTT LEKIERMNQK GPYLGIVAPN NYELNPLLGS KAYFPSSSLP FIDFAGRKFR FGKLSNQPVI IVMSGLGMVN 101: AGVTTQLLVS LFRLKGVLHY GIAGNADVNL EIGDVTIPQY WAHSGLWNWQ RYGDGIDNEL ALESGGDYTR EVGYLQFSKY SNRTDNLLNR VWYQPEEIFP 201: VTGTPEERQH VFWIPVDKSY LKLARKLEDT KLPQCVNTTC LPRPPKVTIV KRGMSASVFI DNAAYRTFLN SKFNATAVEM ESAAVALISH QQNLPFIVIR 301: ALSDLAGGGS DVSNEASIFS SLAAENSVDI LVKFVALLPP HESKIQSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)