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AT4G25840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.751
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycerol-3-phosphatase 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycerol-3-phosphatase 1 (GPP1); FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G57440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:3.1.3.21eggNOG:COG0637eggNOG:KOG2914EMBL:AK119129
EMBL:AL049480EMBL:AL161564EMBL:AY088882EMBL:BT005264
EMBL:CP002687EnsemblPlants:AT4G25840EnsemblPlants:AT4G25840.1entrez:828690
Gene3D:3.40.50.1000GeneID:828690Genevisible:F4JTE7GO:GO:0000121
GO:GO:0006114GO:GO:0009507GO:GO:0016311GO:GO:0043136
GO:GO:0046872Gramene:AT4G25840.1gramene_pathway:2.7.1.26gramene_pathway:2.7.7.2
gramene_pathway:RIBOSYN2-PWYhmmpanther:PTHR18901hmmpanther:PTHR18901:SF38HOGENOM:HOG000248341
InParanoid:F4JTE7InterPro:IPR006439InterPro:IPR023214iPTMnet:F4JTE7
KEGG:ath:AT4G25840KO:K17623OMA:DSPFGVTPaxDb:F4JTE7
Pfam:F4JTE7Pfam:PF13419PIR:T04238PRIDE:F4JTE7
PRO:PR:F4JTE7ProteinModelPortal:F4JTE7Proteomes:UP000006548Reactome:R-ATH-73614
RefSeq:NP_567731.1SMR:F4JTE7STRING:3702.AT4G25840.1SUPFAM:SSF56784
TAIR:AT4G25840tair10-symbols:GPP1TIGRfam:TIGR01509TIGRFAMs:TIGR01509
UniGene:At.32227UniProt:F4JTE7
Coordinates (TAIR10) chr4:+:13139026..13140719
Molecular Weight (calculated) 33072.90 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.20
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTTPTRFVA LRIPFRSSNK IPISIAPSPK VFPRKPVIRV PASLRFVATM STPAAAVNAT VTVTDAGRGS ITHVIFDMDG LLLDTEKFYT EVQEKILARY
101: NKTFDWSLKA KMMGRKAIEA ARLFVDESGI SDSLSAEDFI VERESMLQDL FPTSDLMPGA SRLLRHLHGK GIPICIATGT HTRHFDLKTQ RHRELFSLMH
201: HVVRGDDPEV KEGKPAPDGF LAASRRFEDG PVDPRKVLVF EDAPSGVQAA KNAGMNVIMV PDSRLDKSYC NVADQVLASL LDFKPEEWGL PSFQDSHN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)