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AT4G25835.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.690
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:3.6.1.3eggNOG:COG0465eggNOG:KOG0743EMBL:AK221930
EMBL:AL049480EMBL:AY075607EMBL:CP002687EnsemblPlants:AT4G25835
EnsemblPlants:AT4G25835.1entrez:828689Gene3D:3.40.50.300GeneID:828689
Genevisible:Q8RY66GO:GO:0005524GO:GO:0005739GO:GO:0016887
GO:GO:0034551Gramene:AT4G25835.1hmmpanther:PTHR23070hmmpanther:PTHR23070:SF17
HOGENOM:HOG000237995InterPro:IPR003593InterPro:IPR003959InterPro:IPR025753
InterPro:IPR027243InterPro:IPR027417KEGG:ath:AT4G25835OMA:FAECQSF
PANTHER:PTHR23070:SF17PaxDb:Q8RY66Pfam:PF00004Pfam:PF14363
PhylomeDB:Q8RY66ProteinModelPortal:Q8RY66Proteomes:UP000006548RefSeq:NP_567730.1
SMART:SM00382SMR:Q8RY66STRING:3702.AT4G25835.1SUPFAM:SSF52540
TAIR:AT4G25835UniGene:At.32228UniProt:Q8RY66
Coordinates (TAIR10) chr4:+:13136117..13137637
Molecular Weight (calculated) 57618.30 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.41
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MKEYWTSLAS LLGVLAFCQS LMNSVFPPEL RFAISKLFNK FFKLFSTFCY FDITEIDGVN TNELYNAVQL YLSSSVSIAG NRLSLTRAVN SSSVTFGLSN
101: NDSIVDTFNS VTVVWEHIVT QRQTQTFAWR PMPEEKRGFT LRIKKKDKNL ILDSYLDYIM EKANEIRRLN QDRLLYTNSR GGSLDSRGLP WESVPFKHPS
201: TFDTLAMDPV KKQQIMEDLK DFAECQSFYE RTGRAWKRGY LLYGPPGTGK SSMIAAMANY LRYDIYDLEL TEVKSNSELR KLLMKTSSKS IIVIEDIDCS
301: INLTNRNKKQ STGSYNEPEM LTGSGLGDDL GDGNTITLSG LLNFTDGLWS CCGSERIFVF TTNHIEKLDP ALLRSGRMDM HIHMSYCTFS SVKILLRNYL
401: GFEEGDLNDV VLKELAEVVD RAEITPADVS EALIKNRRDK ERAVRELLVD LRSRVERNEK NGKSRVQNVS LEEQENRAFD SLYAEENGGE EEEIEDNICK
501: SSDDCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)