AT4G23840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.370 plasma membrane 0.330 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat family protein (TAIR:AT1G15740.1); Has 13188 Blast hits to 8222 proteins in 561 species: Archae - 2; Bacteria - 5781; Metazoa - 2271; Fungi - 110; Plants - 3199; Viruses - 40; Other Eukaryotes - 1785 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12400379..12403190 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65768.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.01 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||
| Length | 597 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESPLVRLCL KEACKSGDAV ERWRLQRRSL ESLPPHLADA LLRRLLKKRL LFPSLLEGFK YSVENIDLRG KSSVNAEWMA YIGGFVNLIT LNLSDCQRIN 101: SSTLWPITGL TSLTELDLSR CFKVTDAGMK HLQSVVNLKK LWISQTGVTE VGISLLASLK KLSLLDLGGL PVTDQNLISL QALTKLEYLD IWGSNVTNQG 201: AVSILKFSNL SFLNLSWTSI TQTPNIPHLE CLHMNTCTIV SEPKTHSSLA SLKKLVLSGA NFSAETESLS FTNKSCITYL DVSKTSLKNF SFLETMFNLE 301: HLDLSSTAFG DDSVGFVACV GENLKNLNVS DTQITPSGVG NLAGHVPQLE TLSMSQTFVD DLSILLISTT MPCIKALDLG MNSTLGFYYL ISPQEEKEKS 401: LAALQSLTSL ETLSLEHPYL GDKALSGLSS LTGLTHLSLT STSLTDSTLH HLSSLPNLVS LGVRDGVLTS NGLEKFRPPN RLRTLDLQGC WLLTKDDIAG 501: LCKRYPHIKV RHEHADSSSL DQNQLLPRSS TPQSFGKVAR RNNQRPESSV AVPRSFLDQR VKYNREELVA LQNSPLSQLL PWEELVSVPE LLADSVI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)