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AT3G18030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.963
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HAL3-like protein A
Curator
Summary (TAIR10)
flavin mononucleotide flavoprotein involved in salt and osmotic tolerance HAL3A encodes for phosphopantothenoylcysteine decarboxylase being involved in Coenzyme A biosynthesis. HAL3A is predominant over another gene with the presumably same function (HAL3B).
Computational
Description (TAIR10)
HAL3-like protein A (HAL3A); CONTAINS InterPro DOMAIN/s: Flavoprotein (InterPro:IPR003382); BEST Arabidopsis thaliana protein match is: Flavoprotein (TAIR:AT1G48605.1); Has 7047 Blast hits to 7045 proteins in 2495 species: Archae - 186; Bacteria - 4343; Metazoa - 125; Fungi - 269; Plants - 90; Viruses - 5; Other Eukaryotes - 2029 (source: NCBI BLink).
Protein Annotations
BioGrid:6660BRENDA:4.1.1.36DNASU:821327EC:4.1.1.36
eggNOG:COG0452eggNOG:KOG0672EMBL:AB026641EMBL:AF166262
EMBL:AK228559EMBL:BT014781EMBL:BT015689EMBL:CP002686
EnsemblPlants:AT3G18030EnsemblPlants:AT3G18030.1entrez:821327EvolutionaryTrace:Q9SWE5
Gene3D:3.40.50.1950GeneID:821327Genevisible:Q9SWE5GO:GO:0004633
GO:GO:0005829GO:GO:0015937GO:GO:0040008GO:GO:0042538
Gramene:AT3G18030.1gramene_pathway:4.1.1.36gramene_pathway:COA-PWYhmmpanther:PTHR14359
HOGENOM:HOG000187629InterPro:IPR003382KEGG:ath:AT3G18030KO:K01598
OMA:IYHNRDEPaxDb:Q9SWE5PDB:1E20PDB:1MVL
PDB:1MVNPDBsum:1E20PDBsum:1MVLPDBsum:1MVN
Pfam:PF02441Pfam:Q9SWE5PhylomeDB:Q9SWE5PRIDE:Q9SWE5
PRO:PR:Q9SWE5ProteinModelPortal:Q9SWE5Proteomes:UP000006548Reactome:R-ATH-196783
RefSeq:NP_188430.1SMR:Q9SWE5STRING:3702.AT3G18030.1SUPFAM:SSF52507
TAIR:AT3G18030tair10-symbols:ATHAL3tair10-symbols:ATHAL3Atair10-symbols:HAL3
tair10-symbols:HAL3AUniGene:At.24652UniPathway:UPA00241UniProt:Q9SWE5
Coordinates (TAIR10) chr3:-:6167883..6168629
Molecular Weight (calculated) 23356.10 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.12
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGKRDRQD MEVNTTPRKP RVLLAASGSV AAIKFGNLCH CFTEWAEVRA VVTKSSLHFL DKLSLPQEVT LYTDEDEWSS WNKIGDPVLH IELRRWADVL
101: VIAPLSANTL GKIAGGLCDN LLTCIIRAWD YTKPLFVAPA MNTLMWNNPF TERHLLSLDE LGITLIPPIK KRLACGDYGN GAMAEPSLIY STVRLFWESQ
201: AHQQTGGTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)