AT4G22790.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.987 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 7578 Blast hits to 7441 proteins in 1706 species: Archae - 65; Bacteria - 4933; Metazoa - 143; Fungi - 328; Plants - 1275; Viruses - 0; Other Eukaryotes - 834 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:11975153..11976628 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53705.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.28 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.63 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 491 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSETSKSESL DPEVSEGLCS KTLMQSIVHE LKLQMRIGLP LVVMNLLWFG KMTTTSVFLG RQGELNLAGG SLGFSFANVT GFSVLYGISA AMEPICGQAF 101: GAKNFKLLHK TLFMAVLLLL LISVPISFLW LNVHKILTGF GQREDISFIA KKYLLYLLPE LPILSFLCPL KAYLSSQGVT LPIMFTTAAA TSLHIPINIV 201: LSKARGIEGV AMAVWITDFI VVILLTGYVI VVERMKENKW KQGGWLNQSA QDWLTLIKLS GPCCLTVCLE WWCYEILVLL TGRLPNPVQA VSILIIVFNF 301: DYLLYAVMLS LGTCVATRVS NELGANNPKG AYRAAYTTLI VGIISGCIGA LVMIAFRGFW GSLYTHHDQL ILNGVKKMML IMAVIEVVNF PLMVCGEIVR 401: GTAKPSLGMY ANLSGFYLLA LPLGATLAFK AKQGLQGFLI GLFVGISLCL SILLIFIARI DWEKEAGKAQ ILTCNTEDEQ TSQGSGQDSH S |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)