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AT4G17640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.569
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : casein kinase II beta chain 2
Curator
Summary (TAIR10)
Encodes casein kinase II beta (regulatory) subunit.
Computational
Description (TAIR10)
casein kinase II beta chain 2 (CKB2); FUNCTIONS IN: protein kinase regulator activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: protein kinase CK2 complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta chain 1 (TAIR:AT5G47080.1); Has 1087 Blast hits to 1085 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 424; Fungi - 286; Plants - 156; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5041eggNOG:KOG3092EMBL:AK119067EnsemblPlants:AT4G17640
EnsemblPlants:AT4G17640.1entrez:827484ExpressionAtlas:Q541V5Gene3D:1.10.1820.10
Gene3D:2.20.25.20GeneID:827484GO:GO:0005956GO:GO:0016301
GO:GO:0019887Gramene:AT4G17640.1hmmpanther:PTHR11740hmmpanther:PTHR11740:SF4
InterPro:IPR000704InterPro:IPR016149InterPro:IPR016150OMA:CEGHALL
PANTHER:PTHR11740PaxDb:Q541V5Pfam:P40229Pfam:PF01214
PhylomeDB:Q541V5PRIDE:Q541V5PRINTS:PR00472PROSITE:PS01101
ProteinModelPortal:Q541V5RefSeq:NP_193499.1scanprosite:PS01101SMART:SM01085
SMR:Q541V5STRING:3702.AT4G17640.1SUPFAM:0047698SUPFAM:SSF57798
TAIR:AT4G17640tair10-symbols:CKB2UniGene:At.21221UniProt:P40229
UniProt:Q541V5
Coordinates (TAIR10) chr4:+:9825438..9826988
Molecular Weight (calculated) 31979.50 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.59
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MYRERGMVGS KSEVVDRKRI NEIHDNRPSH SMSQPVNGKG KVTSTSVLMG KQQLHDKESS RSGSISKTNI SDAVDISDTD SEESEVSGSD GEDTSWISWF
101: CNLRGNEFFC EVDDDYIQDD FNLCGLSHQV PYYDYALDLI LDVESSHGEM FTEEQNELIE SAAEMLYGMI HARFILTSKG LASMLDKYKN YDFGRCPRVY
201: CCGQPCLPVG QSDIPRASTV KIYCPKCEDV YYPRSKYQGN IDGAYFGTTF PHLFLMTYGH LKPQKASQSY TQRVFGFKLH KP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)