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AT4G17440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.874
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT3G60410.3); Has 236 Blast hits to 236 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 233; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J20FeggNOG:ENOG41118M0EMBL:AK118807EMBL:BT025274
EMBL:CP002687EnsemblPlants:AT4G17440EnsemblPlants:AT4G17440.1EnsemblPlants:AT4G17440.2
entrez:827455GeneID:827455Gramene:AT4G17440.1Gramene:AT4G17440.2
hmmpanther:PTHR33130hmmpanther:PTHR33130:SF10InterPro:IPR012438KEGG:ath:AT4G17440
OMA:EAKRTWNPfam:PF07797PhylomeDB:Q8GWJ3Proteomes:UP000006548
RefSeq:NP_001119000.1RefSeq:NP_193474.2TAIR:AT4G17440UniGene:At.32998
UniProt:Q8GWJ3
Coordinates (TAIR10) chr4:+:9727848..9728823
Molecular Weight (calculated) 23168.10 Da
IEP (calculated) 10.36
GRAVY (calculated) -0.83
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MSANSKSERS ASQSAETVAV SNRVVASRSS RQPRLSFSSF APSSEHDNLK KLKSDEISPA REEVPVSVKE REETEEEEAK RTWNLRPRKA YGGSKKGNGV
101: FTAEVCGGGG GGGSEVKNQK SGAGIEPKSN RQRGIPAESP GLGGGEVANE NHRLWVALAR DEIEEDLFSM SGNRSSRRPR KRAKAMQKHL DVIFPGLGLV
201: GMNADCFRVA TSPAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)