AT4G13730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT1G04830.1); Has 3916 Blast hits to 3820 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 1945; Fungi - 714; Plants - 575; Viruses - 0; Other Eukaryotes - 680 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7970299..7974055 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50577.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||
| Length | 449 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKKGIPEWL NSSLWSSSPP IDDRHLRNPA ATSITPPSPP IVERPPFSSS PSAISTAPAP PLPVRPPSKS EINDLQNGSG NDGAGIETPA VSSVEDVSRK 101: AQVVAELSKK VIDLKELRKI ASQGLPDDAG IRSIVWKLLL DYLSPDRSLW SSELAKKRSQ YKQFKEELLM NPSEVTRKMD KSKGGDSNDP KIESPGALSR 201: SEITHEDHPL SLGTTSLWNN FFKDTEVLEQ IERDVMRTHP DMHFFSGDSA VAKSNQDALK NILTIFAKLN PGIRYVQGMN EILAPIFYIF KNDPDKGNAA 301: YAESDAFFCF VELMSGFRDN FCQQLDNSVV GIRYTITRLS LLLKHHDEEL WRHLEVTTKI NPQFYAFRWI TLLLTQEFNF VESLHIWDTL LSDPEGPQET 401: LLRICCAMLI LVRRRLLAGD FTSNLKLLQN YPPTNISHML YVADKLRTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)