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AT4G13560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant protein (LEA) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unfertilized embryo sac 15 (UNE15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: double fertilization forming a zygote and endosperm, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT1G52690.2); Has 494 Blast hits to 336 proteins in 72 species: Archae - 0; Bacteria - 40; Metazoa - 37; Fungi - 6; Plants - 401; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BRENDA:1.1.1.39eggNOG:ENOG410Y2SYeggNOG:KOG4744EMBL:AK118342
EMBL:AL049656EMBL:AL161536EMBL:BT004928EMBL:CP002687
EnsemblPlants:AT4G13560EnsemblPlants:AT4G13560.1entrez:826989GeneID:826989
GO:GO:0005829GO:GO:0009567GO:GO:0048046Gramene:AT4G13560.1
hmmpanther:PTHR34191hmmpanther:PTHR34191:SF1HOGENOM:HOG000238205KEGG:ath:AT4G13560
OMA:EQWIDSAPhylomeDB:Q9T0H6PIR:T06658Proteomes:UP000006548
RefSeq:NP_193092.1STRING:3702.AT4G13560.1TAIR:AT4G13560tair10-symbols:UNE15
UniGene:At.3125UniGene:At.67566UniProt:Q9T0H6
Coordinates (TAIR10) chr4:-:7879764..7880311
Molecular Weight (calculated) 11585.10 Da
IEP (calculated) 7.52
GRAVY (calculated) -1.18
Length 109 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQQQFNAGQ NRGQAQEKAE QWTESAKQTA QSACDKTADL TQSARDKAAD LTQSARDKTA DGSHSANKSA QHNQEQAAGL FGQTGESVKN MAQGALDGVK
101: NSLGMNEKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)