suba logo
AT4G10300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04300.1); Has 485 Blast hits to 485 proteins in 129 species: Archae - 0; Bacteria - 243; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3450eggNOG:ENOG410IYUYEMBL:AL049488EMBL:AL161517
EMBL:BT029333EMBL:CP002687EnsemblPlants:AT4G10300EnsemblPlants:AT4G10300.1
entrez:826622Gene3D:2.60.120.10GeneID:826622GO:GO:0009507
Gramene:AT4G10300.1hmmpanther:PTHR33271hmmpanther:PTHR33271:SF6InterPro:IPR008579
InterPro:IPR011051InterPro:IPR014710KEGG:00230+3.5.3.26KEGG:ath:AT4G10300
KO:K06995OMA:DKHYQFEPfam:PF05899PhylomeDB:Q9SV91
PIR:T04045Proteomes:UP000006548RefSeq:NP_192768.1SMR:Q9SV91
STRING:3702.AT4G10300.1SUPFAM:SSF51182TAIR:AT4G10300UniGene:At.33637
UniProt:Q9SV91
Coordinates (TAIR10) chr4:+:6384564..6385946
Molecular Weight (calculated) 14937.80 Da
IEP (calculated) 8.90
GRAVY (calculated) -0.44
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCIGVVNVT SINPYLTRRS NKPYNSRRPS SMAAAIRAES TEKLGITIEK NPPESKLTQL GVRSWPKWGC PPSKFPWTYS AKETCYLLQG KVKVYPNGSD
101: EGVEIEAGDF VVFPKGMSCT WDVSVAVDKH YQFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)