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AT4G10040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytochrome c-2
Curator
Summary (TAIR10)
Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers.
Computational
Description (TAIR10)
cytochrome c-2 (CYTC-2); CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTOCHROME C-1 (TAIR:AT1G22840.1); Has 4050 Blast hits to 4028 proteins in 748 species: Archae - 0; Bacteria - 1493; Metazoa - 643; Fungi - 252; Plants - 160; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).
Protein Annotations
BioGrid:11894eggNOG:COG3474eggNOG:KOG3453EMBL:AL049481
EMBL:AL161516EMBL:AY045944EMBL:AY079373EMBL:AY087056
EMBL:CP002687EnsemblPlants:AT4G10040EnsemblPlants:AT4G10040.1entrez:826595
Gene3D:1.10.760.10GeneID:826595Genevisible:Q9T0G2GO:GO:0005507
GO:GO:0005758GO:GO:0006122GO:GO:0006123GO:GO:0009055
GO:GO:0020037GO:GO:0070469Gramene:AT4G10040.1hmmpanther:PTHR11961
hmmpanther:PTHR11961:SF8HOGENOM:HOG000009762InParanoid:Q9T0G2IntAct:Q9T0G2
InterPro:IPR002327InterPro:IPR009056KEGG:ath:AT4G10040KO:K08738
OMA:FKVCMACPANTHER:PTHR11961PaxDb:Q9T0G2Pfam:PF00034
Pfam:Q9T0G2Pfscan:PS51007PhylomeDB:Q9T0G2PIR:T04008
PRIDE:Q9T0G2PRINTS:PR00604PRO:PR:Q9T0G2PROSITE:PS51007
ProteinModelPortal:Q9T0G2Proteomes:UP000006548Reactome:R-ATH-111457Reactome:R-ATH-3299685
RefSeq:NP_192742.1SMR:Q9T0G2STRING:3702.AT4G10040.1SUPFAM:SSF46626
TAIR:AT4G10040tair10-symbols:CYTC-2UniGene:At.2925UniProt:Q9T0G2
Coordinates (TAIR10) chr4:+:6277083..6278281
Molecular Weight (calculated) 12239.60 Da
IEP (calculated) 9.79
GRAVY (calculated) -0.71
Length 112 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)