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AT4G05010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G21510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J221eggNOG:ENOG410YXQREMBL:AF162444EMBL:AL161502
EMBL:CP002687EnsemblPlants:AT4G05010EnsemblPlants:AT4G05010.1entrez:825843
GeneID:825843Gramene:AT4G05010.1hmmpanther:PTHR34049HOGENOM:HOG000090562
InParanoid:Q9S9T6InterPro:IPR001810KEGG:ath:AT4G05010OMA:KISMVLF
PaxDb:Q9S9T6Pfam:PF00646Pfam:Q9S9T6PhylomeDB:Q9S9T6
PIR:A85063PRIDE:Q9S9T6PRO:PR:Q9S9T6ProteinModelPortal:Q9S9T6
Proteomes:UP000006548RefSeq:NP_567282.1SMR:Q9S9T6STRING:3702.AT4G05010.1
SUPFAM:SSF81383TAIR:AT4G05010UniGene:At.54152UniProt:Q9S9T6
Coordinates (TAIR10) chr4:+:2567474..2568162
Molecular Weight (calculated) 18970.90 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.64
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYLSDGFEM KSTREYERLG LGFVRFTRGL GRKRILISKR APENDSPPVK RPSHETTESC RSLLETLHQD ILIRVLCHVD HEDLATLKRV SKTIRKAVIE
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)