AT4G04200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.674 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Microsomal signal peptidase 25 kDa subunit (SPC25) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Microsomal signal peptidase 25 kDa subunit (SPC25); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: integral to membrane, signal peptidase complex; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Signal peptidase complex subunit 2 (InterPro:IPR009582); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 25 kDa subunit (SPC25) (TAIR:AT2G39960.1); Has 162 Blast hits to 160 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:2027165..2028866 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 21228.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.26 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||
| Length | 190 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEKKTESAT KNVKKVNLLD HIAIKHLLDE SVSDIVTSRG YKEDVRLSNV KFLLGGIIIV VALVAQFYNK KCGICLLLDF GKYVVLTAVM QLILYIKEKN 101: AILFTYPLEG SFTSTGLVVS SKLPRFSDQY TLTIDSADPQ SISAGKSVQF TKSVTQWLTK DGVLVEGLFW KDVEALVKEY TEAGEPKKKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)