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AT4G02380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : senescence-associated gene 21
Curator
Summary (TAIR10)
Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.
Computational
Description (TAIR10)
senescence-associated gene 21 (SAG21); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant 3 (LEA3) family protein (TAIR:AT1G02820.1); Has 181 Blast hits to 176 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J38NeggNOG:ENOG410ZEWFEMBL:AF069298EMBL:AF410301
EMBL:AK319000EMBL:AL161494EMBL:AY039589EMBL:AY052672
EMBL:AY054147EMBL:AY086267EMBL:AY879295EMBL:CP002687
EnsemblPlants:AT4G02380EnsemblPlants:AT4G02380.1EnsemblPlants:AT4G02380.2entrez:828053
ExpressionAtlas:Q93WF6GeneID:828053GO:GO:0000302GO:GO:0005739
GO:GO:0006952GO:GO:0006979GO:GO:0009409GO:GO:0009414
GO:GO:0009416GO:GO:0009611GO:GO:0009620GO:GO:0009625
GO:GO:0009646GO:GO:0009723GO:GO:0009737GO:GO:0010150
GO:GO:0042542GO:GO:0042631GO:GO:0048364GO:GO:1900055
GO:GO:1900150GO:GO:1900424GO:GO:1902074GO:GO:2000028
hmmpanther:PTHR33509hmmpanther:PTHR33509:SF5HOGENOM:HOG000237812InterPro:IPR004926
OMA:RVASSYCPaxDb:Q93WF6Pfam:PF03242PhylomeDB:Q93WF6
PIR:T01312Proteomes:UP000006548RefSeq:NP_001078346.1RefSeq:NP_567231.1
STRING:3702.AT4G02380.1TAIR:AT4G02380tair10-symbols:AtLEA5tair10-symbols:SAG21
UniGene:At.24964UniProt:Q93WF6
Coordinates (TAIR10) chr4:-:1046414..1046807
Molecular Weight (calculated) 10292.20 Da
IEP (calculated) 10.59
GRAVY (calculated) -0.36
Length 97 amino acids
Sequence (TAIR10)
(BLAST)
1: MARSISNVKI VSAFVSRELS NAIFRRGYAA TAAQGSVSSG GRSGAVASAV MKKKGVEEST QKISWVPDPK TGYYRPETGS NEIDAAELRA ALLNNKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)