suba logo
AT3G62570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G47440.1); Has 338 Blast hits to 328 proteins in 106 species: Archae - 0; Bacteria - 6; Metazoa - 96; Fungi - 65; Plants - 144; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVP4eggNOG:ENOG410Y929EMBL:AF419555EMBL:BT002307
EMBL:CP002686EnsemblPlants:AT3G62570EnsemblPlants:AT3G62570.1entrez:825431
Gene3D:1.25.40.10GeneID:825431GO:GO:0005773Gramene:AT3G62570.1
hmmpanther:PTHR22904hmmpanther:PTHR22904:SF7HOGENOM:HOG000239996InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT3G62570OMA:CIHALET
Pfam:PF13414Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q8W591
PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_191816.1
SMART:SM00028SMR:Q8W591SUPFAM:SSF48452TAIR:AT3G62570
UniGene:At.27395UniProt:Q8W591
Coordinates (TAIR10) chr3:+:23142616..23144563
Molecular Weight (calculated) 61966.60 Da
IEP (calculated) 9.32
GRAVY (calculated) -0.33
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIYSVHNGD KKHWWFTHKK IVDKYIKDAR SLMESEEQND VASAIHLLDA ALSISPRSET ALELKARSLL FLRRFKDVVD MLQDYIPSLK LAVNEEDGSY
101: SYEGSSYSSS SSQLSRKLLS DSSPRRDSSF KCFSVSYLKK KIMAGICKNR DQDKQWRYVV LGQACCHLGL MEDALVLLQT GKRLATVEFR RLSVSLSDDS
201: VSLLLSESSS SSSSSSYAFP PRKVSECETV TNLLAHTKNL LRRRSAGFAA FDAGLFADSI RHFSKILDGR RRPAPQGFLA DCYMHRAAAY KSAGKIAEAI
301: ADCNKTLALE PSCIHALETR ATLLETVRCL PDSLHDLEHL KILYNTILRD RKLPGPPWKR HNVKYREIPG KLCELTTKSK KLKAKMANGE IGNVDYYGLV
401: GVRRGCTRSE LDRANLLLCL RHKPDKALAF MERCDFFDQS EISSVKDRAK MSSLLLYRLI QRGYTALAAA IAEEEQRKKM MVLTQMSTKT VEEHEPVEKS
501: GSITLTDFAE IKPGNSNAYQ GVFCRDLAAV GSLLSRTGFN QPIPMKYDAI SC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)