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AT3G62070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46940.1); Has 137 Blast hits to 135 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYWNeggNOG:ENOG410YQ21EMBL:AK228777EMBL:AL138651
EMBL:BT012529EMBL:BT014831EMBL:CP002686EnsemblPlants:AT3G62070
EnsemblPlants:AT3G62070.1entrez:825380GeneID:825380Gramene:AT3G62070.1
hmmpanther:PTHR31865hmmpanther:PTHR31865:SF2HOGENOM:HOG000237778KEGG:ath:AT3G62070
OMA:IATWRISPhylomeDB:Q9M1R7PIR:T47999Proteomes:UP000006548
RefSeq:NP_191766.1TAIR:AT3G62070UniGene:At.34187UniProt:Q9M1R7
Coordinates (TAIR10) chr3:-:22983710..22984482
Molecular Weight (calculated) 24573.50 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.73
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFEESLVMV SSLSRLSICT SSAYDEAATK NQPDSCVSTS LENFDGAEAD GEVSDDGEGK ENVRESDSDK ETRGFYSLPV TPSRRRRKLT VSGELDANES
101: NKNGSKCSLR RQRREKKKKG VNGECDVGGR EGLTVLTRAR GGDRSLRMGL QEVKACRDLG FELEVPVPGR ISVSTTGSNF DTQTSSGGDS PIATWRISSP
201: GDDPKEVKAR LKVWAQAVAL ASATRQAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)