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AT3G61640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 20
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
arabinogalactan protein 20 (AGP20); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 16 (TAIR:AT2G46330.1); Has 106 Blast hits to 106 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7R0eggNOG:ENOG410Z4BHEMBL:AL132959EMBL:AY084640
EMBL:BT025563EMBL:CP002686EnsemblPlants:AT3G61640EnsemblPlants:AT3G61640.1
entrez:825337GeneID:825337Genevisible:Q9M373GO:GO:0005886
GO:GO:0031225Gramene:AT3G61640.1hmmpanther:PTHR33374hmmpanther:PTHR33374:SF6
HOGENOM:HOG000238140InParanoid:Q9M373InterPro:IPR009424KEGG:ath:AT3G61640
OMA:LMFLIFSPaxDb:Q9M373Pfam:PF06376Pfam:Q9M373
PhylomeDB:Q9M373PIR:T47956PRO:PR:Q9M373Proteomes:UP000006548
RefSeq:NP_191723.1STRING:3702.AT3G61640.1TAIR:AT3G61640tair10-symbols:AGP20
tair10-symbols:AtAGP20TMHMM:TMhelixUniGene:At.34255UniProt:Q9M373
Coordinates (TAIR10) chr3:-:22810283..22810629
Molecular Weight (calculated) 7699.31 Da
IEP (calculated) 4.31
GRAVY (calculated) 0.96
Length 74 amino acids
Sequence (TAIR10)
(BLAST)
1: MASRNSVAVI ALFAFVFAVI SPFAGAQSLA PAPSPTSDGT SIDQGIAYLL MVVALVLTYL IHPLDASSSS YTFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)