AT3G56760.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.989 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CDPK-related kinase 1 (TAIR:AT2G41140.1); Has 115971 Blast hits to 114244 proteins in 3013 species: Archae - 152; Bacteria - 14469; Metazoa - 43130; Fungi - 12702; Plants - 24192; Viruses - 490; Other Eukaryotes - 20836 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:21020661..21023756 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 64550.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 577 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGLCHGKPIE QQSKNLPISN EIEETPKNSS QKAKSSGFPF YSPSPLPSLF KTSPAVSSSS VSSTPLRIFK RPFPPPSPAK HIRALLARRH GSVKPNEASI 101: PEGSECEVGL DKKFGFSKQF ASHYEIDGEV GRGHFGYTCS AKGKKGSLKG QDVAVKVIPK SKMTTAIAIE DVRREVKILR ALTGHKNLVQ FYDAFEDDEN 201: VYIVMELCQG GELLDKILQR GGKYSEVDAK KVMIQILSVV AYCHLQGVVH RDLKPENFLF TTKDESSPLK AIDFGLSDYV RPDERLNDIV GSAYYVAPEV 301: LHRTYGTEAD MWSIGVIAYI LLCGSRPFWA RSESGIFRAV LKAEPNFEEA PWPSLSPDAV DFVKRLLNKD YRKRLTAAQA LCHPWLVGSH ELKIPSDMII 401: YKLVKVYIMS SSLRKSALAA LAKTLTVPQL TYLQEQFNLL GPSKNGYISM QNYKTAILKS STEATKDSRV LDFVHMISCL QYKKLDFEEF CASALSVYQL 501: EAMETWEQHA RRAYELYEKD GNRVIMIEEL ATELGLGPSV PVHVVLQDWI RHSDGKLSFL GFVRLLHGVS SRTLQKA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)