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AT3G53670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37480.1); Has 176 Blast hits to 173 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 13; Plants - 154; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVPVeggNOG:ENOG41105QFEMBL:AF386972EMBL:AL132966
EMBL:AY072538EMBL:CP002686EnsemblPlants:AT3G53670EnsemblPlants:AT3G53670.1
EnsemblPlants:AT3G53670.2entrez:824534GeneID:824534Gramene:AT3G53670.1
Gramene:AT3G53670.2hmmpanther:PTHR34952HOGENOM:HOG000131718IntAct:Q9LFF4
KEGG:ath:AT3G53670OMA:MSSVCGGPhylomeDB:Q9LFF4PIR:T45907
Proteomes:UP000006548RefSeq:NP_001190081.1RefSeq:NP_190935.1TAIR:AT3G53670
UniGene:At.21122UniProt:Q9LFF4
Coordinates (TAIR10) chr3:+:19891104..19892214
Molecular Weight (calculated) 21935.40 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.84
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSVCGGLDF KDAESSSASS PIICSTGVKH ISCVGSDDAQ ESDGDDSGYI HQTVIEESKD KAISEPIPES LPLNSLDDES EDKNLATALQ DMFSESMSVV
101: TLIPAIKGGR EKHGKSLEKL SVSWAEDVYD PPPSIVSHTR SKKQQPQKSK SKDNLKKNGK KGQKGSSNSR SSKDKKQISS RSSKYSRDKF DWTTQMSVLA
201: ASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)