AT3G46890.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.872 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: maternal effect embryo arrest 60 (TAIR:AT5G05950.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:17266416..17267030 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 21837.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.04 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.79 | ||||||||||||||||||||||||||||
| Length | 204 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAISNGAVEF LRRRLLPTTL IHVTAIDGIV NVNSLFSLAL FLGLTTSGNI TFPVSSSASE NHHLRRCISA KGPALAERLV SSHVYSFSLF LFSSLIAMSL 101: KQAIRTTTTT TNGNCLEEEA RVLNAGEGRV NLAALRVGIV ASCVASVLGC GFLTMALVDL VQIKLGPLEC KRSFHALAAI VPLVVLVPSA LIIYVFLVLY 201: AFIY |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)