AT3G45710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.629 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G45700.1); Has 3682 Blast hits to 3580 proteins in 536 species: Archae - 2; Bacteria - 690; Metazoa - 461; Fungi - 187; Plants - 2116; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16782719..16784617 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61646.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.13 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.37 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 560 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADSKSGDTE VAHRSSDPSE KRGGWITLPF MLVTLLGMSI TSFGWGMNLI VFLIEEFHIK NIAAAQISNV VNGVVNMLPV VAAILADSFF GNIPVISTST 101: FISLAGTSLL TLITSLNYLM PRPCETGSIL CQSPSKLQLG ILYVALALVI IGSAGTRFTL AAAGANQYKK PKEQGRFFNW FFLALYIGAI TGTTAIVYTQ 201: DNASWKLGFG LCAVANLISF IVFIAGVRFY KHDKPLGSPY TSLIRVLVAA TMKRKAVISS KDEDYHQYGL GKEAKTYTTM PSKSFRFLNR AALKNKEDLN 301: TSGDSSNNMW RLCSVQEVED FKAILRLVPL WAAVMFLSTP VAVQMSMTVL QALVMDRKLS PHFEVSAGSL QVIVLVFGCV FIMLNNWIIY PMYQKLIGKP 401: LTPLQQVGIG HVFTILSMAI SAVVEAKRLK TVENGGHPMS VLWLVPALVM VGIGEAFHFP ANVAVFYGEF PESLKNTATS LTSVVIGISF YLSTAVIDVI 501: QRTTSWLPND INHGRVDNVY WVVVIGGVLN LGYFLVCSWF YKYRNLKDDD HEQDPKDVKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)