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AT3G43800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutathione S-transferase tau 27
Curator
Summary (TAIR10)
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
Computational
Description (TAIR10)
glutathione S-transferase tau 27 (GSTU27); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 19 (TAIR:AT1G78380.1); Has 4782 Blast hits to 4764 proteins in 905 species: Archae - 0; Bacteria - 1867; Metazoa - 364; Fungi - 167; Plants - 1894; Viruses - 0; Other Eukaryotes - 490 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G43800-MONOMEREC:2.5.1.18eggNOG:ENOG410XSIXeggNOG:KOG0406
EMBL:AF370274EMBL:AL162691EMBL:AY062941EMBL:AY085847
EMBL:CP002686EnsemblPlants:AT3G43800EnsemblPlants:AT3G43800.1entrez:823491
Gene3D:1.20.1050.10Gene3D:3.40.30.10GeneID:823491Genevisible:Q9LZG7
GO:GO:0004364GO:GO:0005737GO:GO:0005829GO:GO:0006749
GO:GO:0009407GO:GO:0009636GO:GO:0080167Gramene:AT3G43800.1
hmmpanther:PTHR11260hmmpanther:PTHR11260:SF204HOGENOM:HOG000125749InParanoid:Q9LZG7
InterPro:IPR004045InterPro:IPR010987InterPro:IPR012336KEGG:ath:AT3G43800
KO:K00799ncoils:CoilOMA:WETIGGFPaxDb:Q9LZG7
Pfam:PF02798Pfam:PF13410Pfam:Q9LZG7Pfscan:PS50404
Pfscan:PS50405PhylomeDB:Q9LZG7PIR:T47416PRIDE:Q9LZG7
PRO:PR:Q9LZG7PROSITE:PS50404PROSITE:PS50405ProteinModelPortal:Q9LZG7
Proteomes:UP000006548RefSeq:NP_189966.1SMR:Q9LZG7STRING:3702.AT3G43800.1
SUPFAM:SSF47616SUPFAM:SSF52833TAIR:AT3G43800tair10-symbols:ATGSTU27
tair10-symbols:GSTU27UniGene:At.20539UniProt:Q9LZG7
Coordinates (TAIR10) chr3:+:15660929..15661784
Molecular Weight (calculated) 26762.20 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.38
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEEEVVVLN FWPSMFGARV IMALEEKEIK FEYKEEDVFG QKTDLLLQSN PVNKKIPVLI HNGKPVCESN IIVEYIDEVW KDDKTLRLLP SDPYQKSQCR
101: FWADLIDKKV FDAGRRTWTK RGKEQEEAKQ EFIEILKVLE RELGDKVYFG GNDNVSMVDL VLISYYPWFH TWETIGGFSV EDHTPKLMDW IRKCLTRPAI
201: SKSLPDPLKI FDRVTQIIKV HEFFYGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)