AT3G28820.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.907 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1216) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28810.1); Has 16797 Blast hits to 5994 proteins in 897 species: Archae - 34; Bacteria - 3395; Metazoa - 2662; Fungi - 1699; Plants - 295; Viruses - 121; Other Eukaryotes - 8591 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:10827714..10829396 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 47788.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.38 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARVQLLLCF TILFASVNLL DVVSAHLKLK PTLPQIEPPQ TLKDVEPYTV KVVMVFVSDL EKECPKTNKF KTFFEKLRAV AKYVCPIQRK DQVDYDKDMK 101: AKAGGLVRAI SSFAIGKIKK EIQEDKMEVI NTFKFMRFLA TKIVGSRKKE ESEESMKLTA EQQKEIKEGI LRWETIITRI TNTMVSSTTN SASSNEESSV 201: GKEASSENSK SSGKESESSA KGESETSAKG ESKTSAKGES ETSSSKSAGG SSTSATKEES SASQSSGVTV TQVEEETSKD VSTFIMNLEK KCPQKEEYKV 301: FFEQLKGTMI APPKERKGLF SRIKSAAGKL SGAMGVIRSR IGSKSAEVKK NMEAYQEQVM KTLEELDTIH SQIVSQTKGK QEGSLTCTPE QQTQIKTTIT 401: KWEQVTTQFV ETAIQSETQS SSTTSSSVGK MNTN |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)