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AT3G28780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1216)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28840.1); Has 491362 Blast hits to 127895 proteins in 3934 species: Archae - 1891; Bacteria - 181160; Metazoa - 101488; Fungi - 34030; Plants - 43823; Viruses - 7305; Other Eukaryotes - 121665 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTVDeggNOG:ENOG41107H3EMBL:CP002686EnsemblPlants:AT3G28780
EnsemblPlants:AT3G28780.1entrez:822510GeneID:822510GO:GO:0010584
Gramene:AT3G28780.1hmmpanther:PTHR31607InParanoid:F4J0E6InterPro:IPR009605
iPTMnet:F4J0E6KEGG:ath:AT3G28780OMA:TSMAKWAPaxDb:F4J0E6
Pfam:PF06746PRIDE:F4J0E6ProteinModelPortal:F4J0E6Proteomes:UP000006548
RefSeq:NP_189520.2STRING:3702.AT3G28780.1TAIR:AT3G28780TMHMM:TMhelix
UniGene:At.42733UniProt:F4J0E6
Coordinates (TAIR10) chr3:-:10806131..10808369
Molecular Weight (calculated) 61332.90 Da
IEP (calculated) 3.92
GRAVY (calculated) -0.40
Length 674 amino acids
Sequence (TAIR10)
(BLAST)
001: MARFPIAICL MLILVASSTI YEAQGVFLLR HYMNKFPKNS QDFEPFAYKG MLSFVDNLEN MAPEKGEYKD FFSKLKAFMS FINTAKGSSS EFQSQMKQQA
101: EGLFKAISAL GVKGGSSADT SKLIESLMSM GKTFAEFKRS GATMMTSEQR RELVTSMAKW AQVIGQFVKK VGDQNGDGAK IDLSSLLGGG SSGLGSSGDS
201: GSPGSDSGSP SADTGSPTDG GSYGDTTGDS GSSAGSPSYP SDDGSGSTAG GPSGSTTDGS AGGESSMGGD SSSAGAAGES GSAATADSGD AAGADSGGAA
301: GADSGGAASA DSGGAAAGET ASGGAAAADT SGGSAETGGE SASGGAASGA GAASGASAKT GGESGEAASG GSAETGGESA SAGAASGGSA ETGGESGSGG
401: AASGGESASG GATSGGSPET GGSAETGGES ASGGAASGGE SASGGAASSG SVESGGESTG ATSGGSAETS DESASGGAAS GGESASGGAA SGGSAETGGE
501: STSSGVASGG STGSESASAG AASGGSTEAN GGAAAGGSTE AGSGTSTETS SMGGGSAAAG GVSESSSGGS TAAGGTSESA SGGSATAGGA SGGTYTDSTG
601: GSPTGSPSAG GPSGSASESS MEGGTFGGQS MGGQAGSASY QSTNYQKTHS KSAGKSSVSH SSEEKSSDSA NADS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)