AT3G28670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.702 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : oxidoreductase, zinc-binding dehydrogenase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); Has 151 Blast hits to 150 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10744183..10746983 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54005.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||
| Length | 491 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKAVVGEDT RLTSVEDRLS HSAIPAEVGL VIGKLSSVLD RGFVFDLIPT PSNDDGEPAC AVLETKDDKR KPSKSKSQSS ESSSLSIDSD WVAEHARQVS 101: RMLLGGMKVV GIYVWASDIA FKNSTMILCQ AMKAVSDAIR HLDPSLNEAL LIHICYSPRR WNCRTCLLSS SITSSNLRPC DFKLGKVLSS LQRFRCSYNF 201: SFRLPIYGEG GSSAQTFTDT IRKELAIHAK ELNSANAMID GDLVHNDEPC NTDGEHEIEL LFPFMKDTRA EASTAKNVTG ILLFTGSVFS YAYLNVKEPV 301: SQAIADIKAD IIRSLQSRLD IICDESEQDL NPTDVGDNEN ADGMSKIPIS KLILNSSIKA CHLRLPRRVL VPWLSGMFIC DYLQPFESLE VVKERCIELM 401: SMEHSSIDES KISEVETETS LLIAESMWDV ISPATSASSF CLGGNVERTT DGEDETKRTS NASTASNVPI LVGIFVLLLS IVLGFMLYQS D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)