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AT3G24100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.737
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family SERF
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family SERF; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family SERF (InterPro:IPR007513); Has 256 Blast hits to 256 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 18; Plants - 70; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5E3eggNOG:ENOG410ZFCREMBL:AF370331EMBL:AY142583
EMBL:CP002686EnsemblPlants:AT3G24100EnsemblPlants:AT3G24100.1entrez:821996
GeneID:821996Gramene:AT3G24100.1hmmpanther:PTHR13596hmmpanther:PTHR13596:SF5
InterPro:IPR007513KEGG:ath:AT3G24100OMA:QRMERDAPfam:PF04419
Proteomes:UP000006548RefSeq:NP_189052.2TAIR:AT3G24100UniGene:At.20054
UniGene:At.47868UniProt:Q94K36
Coordinates (TAIR10) chr3:+:8703373..8704045
Molecular Weight (calculated) 7252.42 Da
IEP (calculated) 11.43
GRAVY (calculated) -1.56
Length 69 amino acids
Sequence (TAIR10)
(BLAST)
1: MTRGSQRERD RERALARTGG KGKNKDDGLT PEQRRERDAK ALQEKTAKKA AQAAAAASSG GGGGKGNNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)