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AT3G20520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SHV3-like 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SHV3-like 3 (SVL3); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterase family protein (TAIR:AT4G26690.1); Has 1100 Blast hits to 834 proteins in 287 species: Archae - 0; Bacteria - 734; Metazoa - 17; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
EC:3.1.4.46eggNOG:COG0584eggNOG:KOG2258EMBL:AC011664
EMBL:BT004193EMBL:CP002686EnsemblPlants:AT3G20520EnsemblPlants:AT3G20520.1
entrez:821598Gene3D:3.20.20.190GeneID:821598Genevisible:F4JEQ1
GO:GO:0006071GO:GO:0006629GO:GO:0008889GO:GO:0016021
GO:GO:0031225Gramene:AT3G20520.1hmmpanther:PTHR23344hmmpanther:PTHR23344:SF8
HOGENOM:HOG000239205InParanoid:F4JEQ1InterPro:IPR004129InterPro:IPR017946
InterPro:IPR030395iPTMnet:F4JEQ1KEGG:ath:AT3G20520OMA:MACPRVI
PANTHER:PTHR23344PaxDb:F4JEQ1Pfam:F4JEQ1Pfam:PF03009
Pfscan:PS51704PRIDE:F4JEQ1PRO:PR:F4JEQ1PROSITE:PS51704
ProteinModelPortal:F4JEQ1Proteomes:UP000006548RefSeq:NP_188688.1STRING:3702.AT3G20520.1
SUPFAM:SSF51695TAIR:AT3G20520tair10-symbols:SVL3TMHMM:TMhelix
UniGene:At.18700UniGene:At.22003UniGene:At.23311UniProt:F4JEQ1
Coordinates (TAIR10) chr3:+:7162845..7165742
Molecular Weight (calculated) 81364.40 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.06
Length 729 amino acids
Sequence (TAIR10)
(BLAST)
001: MACPRVIFLI LITFFILQTA FSSSWQTLSG KPPAVIARGG FSGMFPDSSI QAYQLVNITT SPDVMLWCDL QLTKDGVGIC FPNLKLDNGS NVIRIDPHYK
101: ERFSVDFTWK ELSDVKLAQG VVSRPYIFDD VSSILAIEEV AKLTASGLWL NIQDSAFYAK HNLSMRNSVV SLSRRLKVNF ISSPGISFLK SMKNSVKPTV
201: TKLIFRFLKQ EHIEPFTNQS YGSLAKNLSY IRTFSSGILV PKSYIWPVDS ALYLQPHTSL VTDAHKEGLQ VFASEFANDF VIAYNYSYDP TAEYLSFIDN
301: GNFSVDGFLS DFPVTPYRAI NCFSHVDPKR AKEQAKITII SKNGASGDFP GCTDLAYQRA ASDGADILDC NVQMSKDKIP FCMSSFDLIN STNVIETSFR
401: NLSSVVSEIN PRRSGIYTFS LTMSQIQTLK PTISNLEKDS GLFRNPRNNK AGKFLTLSEF LFLPNRYSSL LGLLIEVENA AYLVEHQGIS VVDAVLDELK
501: RATTQQNKTS ARTILIQSTD KSVLMKFKEK NKMNHDELVY RVDDNIRDVA DSAIKDIKNF AGSIVISKKS VFPYKGFIIL EKETNIASKL KSNGLRVYVE
601: RFSNECVTHA FDFYDDPTLE IDSFVRDVQI DGIITDFPAT TARYRKNKCY GEFGLTTTGE LITFANPMLL PPAEAPYPAL LDSDVTEPPL PEARSQPPAS
701: SPSKAEEKAI EVPFAFIAMA ILVCFFISV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)