AT3G14590.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.995 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NTMC2T6.2; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G53590.1); Has 4051 Blast hits to 3547 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 2246; Fungi - 503; Plants - 944; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:4904448..4907506 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78064.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.47 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||
| Length | 692 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRLRKKLQFE ERKQANQRRV LSDSESVRWL NHAVERIWPI CMEQIASQKI LRPIIPWFLD KYRPWTAKKV VIQHLYLGRN PPLLTDIRVL RQSTGDDHLV 101: LELGMNFLTA DDMSAILAVK LRKRLGFGMW TKLHLTGMHV EGKVLIGVKF LRRWPFLGRL RVCFAEPPYF QMTVKPITTH GLDVAVLPGI AGWLDKLLSV 201: AFEQTLVEPN MLVVDMEKFV SPESGDNWFF VDEKEPVAHA LVEVVEACDV KPSDLNGLAD PYVKGQLGAY RFKTKILWKT LAPKWQEEFK IPICTWDSAN 301: ILNIEVQDKD RFSDDSLGDC SVNIAEFRGG QRNDMWLPLQ NIKMGRLHLA ITVLEDEAKL NDDPFEGVTI CKEDMWASFA SDVTNKGSFS SVVSDKSPRV 401: PDNMEPINIE GQEETGIWVH QPGTEVSQIW EPRKGKSRCL DNKIQCAGSV RSTASTSPNN ESSSTDKNQE GKSEMKSVGW GLKKIGLVFH KNGKKEECHH 501: TGSIEEDIRS PRINLKALNQ KDVGVKFIVE DRLSGPLTGR SPKGESFDSE DSQHKRHMKD VAKSILKHAE KSARHLKHAF SHKGSRKSRD DECSTVSEQD 601: SECLSETSDD KSAFSNVQDL GTLRRAKLEG KTVKAGEDDN VNTSANSKDD SKNKETKKNL ANLETTYSDA RNSFAGAEKV TTPKNRKGII GK |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)