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AT3G13070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CBS domain-containing protein / transporter associated domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated domain (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT1G55930.1); Has 15808 Blast hits to 15803 proteins in 2590 species: Archae - 162; Bacteria - 11531; Metazoa - 244; Fungi - 136; Plants - 197; Viruses - 0; Other Eukaryotes - 3538 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1253eggNOG:KOG2118EMBL:AP000375EMBL:CP002686
EnsemblPlants:AT3G13070EnsemblPlants:AT3G13070.1entrez:820495Gene3D:3.30.465.10
GeneID:820495Genevisible:Q9LK65GO:GO:0006810GO:GO:0009941
GO:GO:0016021GO:GO:0016614GO:GO:0031969GO:GO:0050660
Gramene:AT3G13070.1hmmpanther:PTHR22777hmmpanther:PTHR22777:SF3HOGENOM:HOG000062297
InParanoid:Q9LK65InterPro:IPR000644InterPro:IPR002550InterPro:IPR005170
InterPro:IPR016166InterPro:IPR016169iPTMnet:Q9LK65KEGG:ath:AT3G13070
OMA:DGDLEYQPaxDb:Q9LK65Pfam:PF00571Pfam:PF01595
Pfam:PF03471Pfam:Q9LK65Pfscan:PS51371PhylomeDB:Q9LK65
PRIDE:Q9LK65PRO:PR:Q9LK65PROSITE:PS51371ProteinModelPortal:Q9LK65
Proteomes:UP000006548RefSeq:NP_187914.1SMART:SM00116SMART:SM01091
SMR:Q9LK65STRING:3702.AT3G13070.1SUPFAM:SSF54631SUPFAM:SSF56176
TAIR:AT3G13070TMHMM:TMhelixUniGene:At.39497UniProt:Q9LK65
Coordinates (TAIR10) chr3:-:4191511..4195112
Molecular Weight (calculated) 73756.70 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.07
Length 661 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGMALELSV LGRSVIDSKT LNLKRYGQKS KLSGRFLPRA ELHCPVALSS SKHSNLSFRF RRSCEFSYRS RFMLFSSSQC HEGSQRKSDS GEKELESIKV
101: LLKRGIVIGA LVCGVFLYGC QKVLASAGVV EAGYEVFGQS VVLFKNALPK IYQVLTVLRE QGLILAALLS LSAFFSMAET SITTLWPWKV RELAEKEPEN
201: GVFRMLRSDV TRFLTTILIG TTVVNIAATA LVTEAATAIF GEAGVSAATG LMTVAILLLT EITPKSVAVH NAQEVARIVV RPVAWLSLVL YPVGRIVTYL
301: SMGILKILGL KGRSEPYVTE DELKLMLRGA ELSGAIEEEE QDMIENVLEI KDTHVREVMT PLVDVVAIDA SASLVDFHSM WVTHQYSRVP VFEQRIDNIV
401: GIAYAMDLLD YVQKGDLLES TSVGDMAHKP AYFVPDSMSV WNLLREFRIR KVHMAVVLNE YGGTIGIVTL EDVVEEIVGE IFDENDSKEE IQKKTGYIVM
501: RDEGIYDVDA NTSIDQLSEE LNMKMPEGIQ YETVSGFVCE AFGYIPKTGE SVKVVLEKES WEEDGEEEEG KQERQEPKEK NQIYRVEILA GNARKVSAVR
601: FERVNDMDQV SEASDVKSMV PKFVRKWSSE EDDGNLSNEE DQSENAVLDE HVLADNSKKQ Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)