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AT3G12210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 220 Blast hits to 220 proteins in 100 species: Archae - 3; Bacteria - 2; Metazoa - 90; Fungi - 77; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
DNASU:820401eggNOG:ENOG410IE0XeggNOG:ENOG411253UEMBL:AF370267
EMBL:AY063022EMBL:CP002686EnsemblPlants:AT3G12210EnsemblPlants:AT3G12210.1
entrez:820401ExpressionAtlas:Q94K65GeneID:820401GO:GO:0003677
GO:GO:0006281Gramene:AT3G12210.1hmmpanther:PTHR21521hmmpanther:PTHR21521:SF0
HOGENOM:HOG000240215PhylomeDB:Q94K65Proteomes:UP000006548RefSeq:NP_850569.1
STRING:3702.AT3G12210.2TAIR:AT3G12210UniGene:At.22634UniProt:Q94K65
Coordinates (TAIR10) chr3:+:3894843..3895498
Molecular Weight (calculated) 17581.20 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.24
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MELEFKCSDV GVWKEALSSY DSRIESLNKP ELVSLDQFYR IKLPCLLHDR DPNPYLTTSE LSQLMKWKLS RGKWRPRLLD FVSSLDDSVV KSASEKAFKS
101: LPDISKAVKE LTVLKGVGAA TASAVLAAYA PDIAPFMSDE ERQWRWLLGT QRITL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)