AT3G11950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRAF-like superfamily protein; FUNCTIONS IN: prenyltransferase activity, zinc ion binding; LOCATED IN: chloroplast, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Zinc finger, TRAF-type (InterPro:IPR001293), TRAF-like (InterPro:IPR008974); Has 15053 Blast hits to 10174 proteins in 1128 species: Archae - 119; Bacteria - 2147; Metazoa - 5510; Fungi - 1379; Plants - 699; Viruses - 108; Other Eukaryotes - 5091 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3783273..3785098 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64235.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.34 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPPVSDLES IEDQKEGGPS FHCDLYDTQV VHKIAQVFLP GLATACVDNT TGDIFRSPGS VAADIRKEMI EYLTRRSETF VAEHIVLQGG SEIEASHDPF 101: DIISDFIDDF ATSKRNLFSR VSGWMLSERR EDNIDDFAQE MEISGFWLTD HREGIAQTLL KNVDFKSSAH CEMKFQTEGE LAEHAMNCGY RTMNCENEGC 201: TAVFCANQME NHDSVCPFKI IPCEQNCSES IMRRDMDRHC ITVCPMKLVN CPFHSVGCLS DVHQCEVQQH HLDNVSSHLM YILRSIYKEA SLDDLKPRAE 301: QIQQLSTRLS EARNARSLTN LVKEIDGKLG PLEIKPKIVT DSESDKPENT EKKALEEAEI KEKPETSNLK AVTLEQTARE APEDKLVSKE VDAAMVKEAA 401: KKVSEAEIAD NVNEEGELKA QKLLEIGEFI KEGDNNSADD LSERTETKAP EVVVMDEARE EEDSVETKDT RTYETIRGLE IEANEMIDEE TKKSTETKTE 501: APSRIVMDKE GDEETKKSTE TETEAPSRIV METEKDEETM NSRARASDEA EALSKSSQGF STVQAETVPH MS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)