AT3G10915.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.833 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Reticulon family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 1 (TAIR:AT4G23630.1); Has 429 Blast hits to 429 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:3416573..3417497 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 18171.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.22 | ||||||||||||||||||||||||
| Length | 162 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN 101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVM KLTHSETHDD VE |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)