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AT3G02210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : COBRA-like protein 1 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
COBRA-like protein 1 precursor (COBL1); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 2 precursor (TAIR:AT3G29810.1); Has 380 Blast hits to 369 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHWUeggNOG:ENOG410YAACEMBL:AC009755EMBL:AK118555
EMBL:BT005373EMBL:CP002686EnsemblPlants:AT3G02210EnsemblPlants:AT3G02210.1
entrez:821245GeneID:821245Genevisible:Q9SRT7GO:GO:0005886
GO:GO:0010215GO:GO:0016049GO:GO:0031225Gramene:AT3G02210.1
hmmpanther:PTHR31673hmmpanther:PTHR31673:SF3HOGENOM:HOG000231433InParanoid:Q9SRT7
InterPro:IPR006918KEGG:ath:AT3G02210OMA:PKGPRIAPaxDb:Q9SRT7
Pfam:PF04833Pfam:Q9SRT7PhylomeDB:Q9SRT7PIRSF:PIRSF038122
PRIDE:Q9SRT7PRO:PR:Q9SRT7ProDom:PD140986Proteomes:UP000006548
RefSeq:NP_186870.1STRING:3702.AT3G02210.1TAIR:AT3G02210tair10-symbols:COBL1
UniGene:At.41171UniProt:Q9SRT7
Coordinates (TAIR10) chr3:-:409352..411478
Molecular Weight (calculated) 50365.40 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.14
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)