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AT3G01750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G04140.1); Has 30372 Blast hits to 15038 proteins in 745 species: Archae - 53; Bacteria - 2422; Metazoa - 15116; Fungi - 2165; Plants - 2906; Viruses - 97; Other Eukaryotes - 7613 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:AC009325EMBL:AC010797
EMBL:AY065412EMBL:AY096522EMBL:CP002686EnsemblPlants:AT3G01750
EnsemblPlants:AT3G01750.1entrez:821087Gene3D:1.25.40.20GeneID:821087
Gramene:AT3G01750.1hmmpanther:PTHR24198hmmpanther:PTHR24198:SF55HOGENOM:HOG000241330
InterPro:IPR002110InterPro:IPR020683KEGG:ath:AT3G01750OMA:RQRFSKP
Pfam:PF12796Pfam:PF13857Pfscan:PS50088Pfscan:PS50297
PhylomeDB:Q9S7I4PROSITE:PS50088PROSITE:PS50297Proteomes:UP000006548
RefSeq:NP_186824.1SMART:SM00248SMR:Q9S7I4STRING:3702.AT3G01750.1
SUPFAM:SSF48403TAIR:AT3G01750UniGene:At.28494UniProt:Q9S7I4
Coordinates (TAIR10) chr3:+:270615..272691
Molecular Weight (calculated) 73136.90 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.35
Length 664 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPTYFPLRW ESTGDQWWYA TPIDYAAANS QYDLVRELLR IDSNNLIKLT SLRRIRRLET VWDDDSQFHD VAACRSRVAR KLLAACDEGG SPGSKRNTLI
101: RSGYGGWLIY TAASAGDLAF VHDLLERNPL LVFGEGEYGV TDILYAAARS KNDDVFRLIY DFAVTPRFGT GGIEQQTGEI PAAYKWEMKN RAVHSASRGG
201: NLILLKELLS DCSVEHVLAF RDKQGSTILH SAAGKGKTQV VKELVASSYH LVDAVDNQGN TALHVAAYRG HADLVDVLIS ASPSLISARN NAGDTFLHAG
301: ISGFQTPAFE RLDKHTELMN RLITSAASKS QGDFVNYRNN EGRTALHLAI SGNVPLEFVE MLMSVKSIDI NIRDNAGMTP LDLIRQKPLS PTSDLLFRRL
401: VSAGGMFSCR DQSITSVVAS HLKDRGNFYS PGARFKTSDA EMFLSTRLEV APEKIGVVVP RHVRSSSCCI EIGQLNVMDE NHHLKKCRNA SVNSTTERLK
501: SVFHWPRVKK QPGHSKNNSD ISIISTTLET QETPVPLRQR FSKSSTSSLD PPNNNKRTLA VRSNQSSPRA KKKRFGSVRS RSSSFSKISI HSSSTSSTSS
601: MVDLKQKGVL IDTSIAGPSG LKRSEPVKNK VSEKQGSVRS RLKSHYFCFG TSALSVKTPA TVLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)