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AT3G01510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : like SEX4 1
Curator
Summary (TAIR10)
Encodes a putative phosphatase, LSF1, required for normal starch turnover in leaves.
Computational
Description (TAIR10)
like SEX4 1 (LSF1); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: starch catabolic process; LOCATED IN: starch grain, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), PDZ/DHR/GLGF (InterPro:IPR001478), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein (TAIR:AT3G52180.1); Has 834 Blast hits to 834 proteins in 152 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 61; Plants - 322; Viruses - 12; Other Eukaryotes - 115 (source: NCBI BLink).
Protein Annotations
EC:3.1.3.-eggNOG:ENOG411126MeggNOG:KOG1616eggNOG:KOG1716
EMBL:AC009325EMBL:AY086403EMBL:CP002686EnsemblPlants:AT3G01510
EnsemblPlants:AT3G01510.1entrez:821127Gene3D:3.90.190.10GeneID:821127
Genevisible:F4J117GO:GO:0005983GO:GO:0008138GO:GO:0009507
GO:GO:0009569GO:GO:0009570GO:GO:0019203GO:GO:0043036
Gramene:AT3G01510.1hmmpanther:PTHR10343hmmpanther:PTHR10343:SF57HOGENOM:HOG000242759
InParanoid:F4J117InterPro:IPR000340InterPro:IPR001478InterPro:IPR014756
InterPro:IPR020422InterPro:IPR029021InterPro:IPR030066InterPro:IPR032640
iPTMnet:F4J117KEGG:00051+3.1.3.-KEGG:00332+3.1.3.-KEGG:00565+3.1.3.-
KEGG:00600+3.1.3.-KEGG:00730+3.1.3.-KEGG:00740+3.1.3.-KEGG:00760+3.1.3.-
KEGG:ath:AT3G01510OMA:GIEAENWPANTHER:PTHR10343:SF57PaxDb:F4J117
Pfam:F4J117Pfam:PF00782Pfam:PF16561Pfscan:PS50054
PRIDE:F4J117PRO:PR:F4J117PROSITE:PS50054ProteinModelPortal:F4J117
Proteomes:UP000006548RefSeq:NP_566139.1SMART:SM00195SMR:F4J117
STRING:3702.AT3G01510.1SUPFAM:SSF50156SUPFAM:SSF52799SUPFAM:SSF81296
TAIR:AT3G01510tair10-symbols:LSF1UniGene:At.41267UniProt:F4J117
Coordinates (TAIR10) chr3:-:198855..201682
Molecular Weight (calculated) 65744.70 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.27
Length 591 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)