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AT3G01210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.957
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G14340.1); Has 327 Blast hits to 327 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 84; Plants - 228; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JB7SeggNOG:ENOG41115J9EMBL:AC008261EMBL:CP002686
EnsemblPlants:AT3G01210EnsemblPlants:AT3G01210.1entrez:821275Gene3D:3.30.70.330
GeneID:821275GO:GO:0000166GO:GO:0003676Gramene:AT3G01210.1
HOGENOM:HOG000240366InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT3G01210
OMA:DFFSHCGPfam:PF00076PhylomeDB:Q9MAD0Proteomes:UP000006548
RefSeq:NP_186770.3SMR:Q9MAD0SUPFAM:SSF54928TAIR:AT3G01210
UniGene:At.41315UniProt:Q9MAD0
Coordinates (TAIR10) chr3:+:72182..73159
Molecular Weight (calculated) 26412.10 Da
IEP (calculated) 5.93
GRAVY (calculated) 0.13
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MYPCGYVAQV TNLSPQATEK DVHRFFSHCG IVELVEITGC QGDALTAYVT FRDAYALDMA VLLSGATIVD QTVWISVYGV YLHESNNLRQ EEDYSVTVTR
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)