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AT1G54290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Translation initiation factor SUI1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: Translation initiation factor SUI1 family protein (TAIR:AT4G27130.1); Has 846 Blast hits to 843 proteins in 268 species: Archae - 14; Bacteria - 1; Metazoa - 362; Fungi - 162; Plants - 197; Viruses - 5; Other Eukaryotes - 105 (source: NCBI BLink).
Protein Annotations
BioGrid:27095eggNOG:COG0023eggNOG:KOG1770EMBL:AC005287
EMBL:AF372910EMBL:BT000649EMBL:CP002684EnsemblPlants:AT1G54290
EnsemblPlants:AT1G54290.1entrez:841870Gene3D:3.30.780.10GeneID:841870
Genevisible:Q94JV4GO:GO:0003743GO:GO:0006417Gramene:AT1G54290.1
hmmpanther:PTHR10388hmmpanther:PTHR10388:SF18HOGENOM:HOG000279813InParanoid:Q94JV4
IntAct:Q94JV4InterPro:IPR001950InterPro:IPR005874KEGG:ath:AT1G54290
KO:K03113OMA:SQDVGSQPaxDb:Q94JV4Pfam:PF01253
Pfam:Q94JV4Pfscan:PS50296PhylomeDB:Q94JV4PIR:D96584
PIRSF:PIRSF004499PRIDE:Q94JV4PRO:PR:Q94JV4PROSITE:PS50296
ProteinModelPortal:Q94JV4Proteomes:UP000006548RefSeq:NP_175831.1SMR:Q94JV4
STRING:3702.AT1G54290.1SUPFAM:SSF55159TAIR:AT1G54290TIGRfam:TIGR01160
TIGRFAMs:TIGR01160UniGene:At.20055UniProt:Q94JV4
Coordinates (TAIR10) chr1:-:20268710..20269390
Molecular Weight (calculated) 12591.00 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.52
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)